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rjpbonnal / bioruby-samtools

Porting of samtools-ruby to BioRuby. Binder of samtools for ruby, on the top of FFI -from original project-
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bio-samtools fail to compile samtools binary due to non-allowed redirection #59

Closed shyamrallapalli closed 8 years ago

shyamrallapalli commented 8 years ago

gem install bio-samtools -v '2.3.3' Building native extensions. This could take a while... ERROR: Error installing bio-samtools: ERROR: Failed to build gem native extension. rake aborted! redirection forbidden: http://sourceforge.net/projects/samtools/files/samtools/1.2/samtools-1.2.tar.bz2/download -> https://sourceforge.net/projects/samtools/files/samtools/1.2/samtools-1.2.tar.bz2/download rake failed, exit code 1

i see that this has been fixed with v2.3.5

could you please publish this to rubygems

alternatively you could also include github link to samtools archive instead of sourceforge links https://github.com/samtools/samtools/releases

wwood commented 8 years ago

+1

MatthewRalston commented 8 years ago

Second... wth.

homonecloco commented 8 years ago

I just release an update to the gem, that also updates the version of samtools to use the github version.