Closed geopolitis closed 5 years ago
@geopolitis working on this now!
Sorry for the trouble. With the fixes I've added, these commands should get you up and running. I updated the box to Ubuntu 18.10 on my end, so you should do that too.
This takes me a long time to finish.
Everything booted for me when I did this and I was able to run the Chapter 2 notebooks. Let me know if this works out for you. Thanks!
@geopolitis Whoops, forgot to name you :)
Verified working if you update the box to ubuntu-bionic-18.04.
Please find attached the vagrant output. There are a few errors, that maybe are related to the next issues.
Find below a summary of them:
1) default: dpkg-preconfigure: unable to re-open stdin: No such file or directory 2) default: dpkg-preconfigure: unable to re-open stdin: No such file or directory 3) default: WARNING conda.core.envs_manager:register_env(46): Unable to register environment. Path not writable or missing. default: environment location: /home/vagrant/anaconda default: registry file: /root/.conda/environments.txt
4) default: default: UnsatisfiableError: The following specifications were found to be incompatible with a past default: explicit spec that is not an explicit spec in this operation (python): default: default: - python=3.5 default: default: The following specifications were found to be incompatible with each other: default: default: default: default: Package setuptools conflicts for: default: pycosat -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip -> wheel -> setuptools default: six -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel -> setuptools default: pyopenssl -> cryptography[version='>=1.9,>=2.1.4,>=2.2.1'] -> cffi[version='>=1.7'] -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel -> setuptools default: python-libarchive-c -> python[version='>=2.7,<2.8.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip -> wheel -> setuptools default: asn1crypto -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip -> wheel -> setuptools default: python=3.5 -> pip -> wheel -> setuptools default: ruamel_yaml -> python[version='>=3.5,<3.6.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip -> wheel -> setuptools default: conda[version='>=4.7.10'] -> requests[version='>=2.18.4,<3'] -> urllib3[version='>=1.21.1,<1.23,>=1.21.1,<1.24,>=1.21.1,<1.25'] -> pyopenssl[version='>=0.14'] -> cryptography[version='>=1.9,>=2.1.4,>=2.2.1'] -> cffi[version='>=1.7'] -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel -> setuptools default: urllib3 -> pyopenssl[version='>=0.14'] -> cryptography[version='>=1.9,>=2.1.4,>=2.2.1'] -> cffi[version='>=1.7'] -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel -> setuptools default: conda-package-handling -> tqdm -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel -> setuptools default: wheel -> setuptools default: requests -> urllib3[version='>=1.21.1,<1.23,>=1.21.1,<1.24,>=1.21.1,<1.25'] -> pyopenssl[version='>=0.14'] -> cryptography[version='>=1.9,>=2.1.4,>=2.2.1'] -> cffi[version='>=1.7'] -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel -> setuptools default: idna -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip -> wheel -> setuptools default: cffi -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel -> setuptools default: pip -> wheel -> setuptools default: chardet -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel -> setuptools default: pysocks -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip -> wheel -> setuptools default: pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel -> setuptools default: tqdm -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel -> setuptools default: cryptography -> cffi[version='>=1.7'] -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel -> setuptools default: certifi -> python[version='>=2.7,<2.8.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip -> wheel -> setuptools default: Package python conflicts for: default: pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] default: conda[version='>=4.7.10'] -> requests[version='>=2.18.4,<3'] -> urllib3[version='>=1.21.1,<1.23,>=1.21.1,<1.24,>=1.21.1,<1.25'] -> pyopenssl[version='>=0.14'] -> cryptography[version='>=1.9,>=2.1.4,>=2.2.1'] -> cffi[version='>=1.7'] -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.6,<3.7.0a0'] default: idna -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] default: ruamel_yaml -> python[version='>=3.5,<3.6.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] default: pycosat -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] default: pip -> wheel -> setuptools -> certifi[version='>=2016.09'] -> python[version='>=2.7,<2.8.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] default: chardet -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] default: six -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] default: requests -> urllib3[version='>=1.21.1,<1.23,>=1.21.1,<1.24,>=1.21.1,<1.25'] -> pyopenssl[version='>=0.14'] -> cryptography[version='>=1.9,>=2.1.4,>=2.2.1'] -> cffi[version='>=1.7'] -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] default: pysocks -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] default: pyopenssl -> cryptography[version='>=1.9,>=2.1.4,>=2.2.1'] -> cffi[version='>=1.7'] -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] default: setuptools -> certifi[version='>=2016.09'] -> python[version='>=2.7,<2.8.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] default: tqdm -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] default: asn1crypto -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] default: conda-package-handling -> tqdm -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] default: wheel -> setuptools -> certifi[version='>=2016.09'] -> python[version='>=2.7,<2.8.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] default: cryptography -> cffi[version='>=1.7'] -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] default: python-libarchive-c -> python[version='>=2.7,<2.8.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] default: cffi -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] default: urllib3 -> pyopenssl[version='>=0.14'] -> cryptography[version='>=1.9,>=2.1.4,>=2.2.1'] -> cffi[version='>=1.7'] -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] default: certifi -> python[version='>=2.7,<2.8.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] default: Package certifi conflicts for: default: idna -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip -> wheel -> setuptools -> certifi[version='>=2016.09'] default: asn1crypto -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip -> wheel -> setuptools -> certifi[version='>=2016.09'] default: tqdm -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel -> setuptools -> certifi[version='>=2016.09'] default: python=3.5 -> pip -> wheel -> setuptools -> certifi[version='>=2016.09'] default: wheel -> setuptools -> certifi[version='>=2016.09'] default: cffi -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel -> setuptools -> certifi[version='>=2016.09'] default: pip -> wheel -> setuptools -> certifi[version='>=2016.09'] default: pyopenssl -> cryptography[version='>=1.9,>=2.1.4,>=2.2.1'] -> cffi[version='>=1.7'] -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel -> setuptools -> certifi[version='>=2016.09'] default: python-libarchive-c -> python[version='>=2.7,<2.8.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip -> wheel -> setuptools -> certifi[version='>=2016.09'] default: six -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel -> setuptools -> certifi[version='>=2016.09'] default: pysocks -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip -> wheel -> setuptools -> certifi[version='>=2016.09'] default: urllib3 -> pyopenssl[version='>=0.14'] -> cryptography[version='>=1.9,>=2.1.4,>=2.2.1'] -> cffi[version='>=1.7'] -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel -> setuptools -> certifi[version='>=2016.09'] default: chardet -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel -> setuptools -> certifi[version='>=2016.09'] default: setuptools -> certifi[version='>=2016.09'] default: conda-package-handling -> tqdm -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel -> setuptools -> certifi[version='>=2016.09'] default: cryptography -> cffi[version='>=1.7'] -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel -> setuptools -> certifi[version='>=2016.09'] default: conda[version='>=4.7.10'] -> requests[version='>=2.18.4,<3'] -> urllib3[version='>=1.21.1,<1.23,>=1.21.1,<1.24,>=1.21.1,<1.25'] -> pyopenssl[version='>=0.14'] -> cryptography[version='>=1.9,>=2.1.4,>=2.2.1'] -> cffi[version='>=1.7'] -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel -> setuptools -> certifi[version='>=2016.09'] default: pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel -> setuptools -> certifi[version='>=2016.09'] default: pycosat -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip -> wheel -> setuptools -> certifi[version='>=2016.09'] default: requests -> urllib3[version='>=1.21.1,<1.23,>=1.21.1,<1.24,>=1.21.1,<1.25'] -> pyopenssl[version='>=0.14'] -> cryptography[version='>=1.9,>=2.1.4,>=2.2.1'] -> cffi[version='>=1.7'] -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel -> setuptools -> certifi[version='>=2016.09'] default: ruamel_yaml -> python[version='>=3.5,<3.6.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip -> wheel -> setuptools -> certifi[version='>=2016.09'] default: Package pip conflicts for: default: chardet -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip default: wheel -> setuptools -> certifi[version='>=2016.09'] -> python[version='>=2.7,<2.8.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip default: pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip default: python=3.5 -> pip default: python-libarchive-c -> python[version='>=2.7,<2.8.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip default: six -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip default: tqdm -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip default: conda-package-handling -> tqdm -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip default: idna -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip default: setuptools -> certifi[version='>=2016.09'] -> python[version='>=2.7,<2.8.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip default: pyopenssl -> cryptography[version='>=1.9,>=2.1.4,>=2.2.1'] -> cffi[version='>=1.7'] -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip default: urllib3 -> pyopenssl[version='>=0.14'] -> cryptography[version='>=1.9,>=2.1.4,>=2.2.1'] -> cffi[version='>=1.7'] -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip default: conda[version='>=4.7.10'] -> requests[version='>=2.18.4,<3'] -> urllib3[version='>=1.21.1,<1.23,>=1.21.1,<1.24,>=1.21.1,<1.25'] -> pyopenssl[version='>=0.14'] -> cryptography[version='>=1.9,>=2.1.4,>=2.2.1'] -> cffi[version='>=1.7'] -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.6,<3.7.0a0'] -> pip default: cffi -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip default: certifi -> python[version='>=2.7,<2.8.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip default: requests -> urllib3[version='>=1.21.1,<1.23,>=1.21.1,<1.24,>=1.21.1,<1.25'] -> pyopenssl[version='>=0.14'] -> cryptography[version='>=1.9,>=2.1.4,>=2.2.1'] -> cffi[version='>=1.7'] -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip default: pysocks -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip default: cryptography -> cffi[version='>=1.7'] -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip default: asn1crypto -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip default: pycosat -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip default: ruamel_yaml -> python[version='>=3.5,<3.6.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip default: Package wheel conflicts for: default: idna -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip -> wheel default: chardet -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel default: pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel default: setuptools -> certifi[version='>=2016.09'] -> python[version='>=2.7,<2.8.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip -> wheel default: requests -> urllib3[version='>=1.21.1,<1.23,>=1.21.1,<1.24,>=1.21.1,<1.25'] -> pyopenssl[version='>=0.14'] -> cryptography[version='>=1.9,>=2.1.4,>=2.2.1'] -> cffi[version='>=1.7'] -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel default: conda-package-handling -> tqdm -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel default: asn1crypto -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip -> wheel default: pyopenssl -> cryptography[version='>=1.9,>=2.1.4,>=2.2.1'] -> cffi[version='>=1.7'] -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel default: certifi -> python[version='>=2.7,<2.8.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip -> wheel default: cffi -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel default: python-libarchive-c -> python[version='>=2.7,<2.8.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip -> wheel default: conda[version='>=4.7.10'] -> requests[version='>=2.18.4,<3'] -> urllib3[version='>=1.21.1,<1.23,>=1.21.1,<1.24,>=1.21.1,<1.25'] -> pyopenssl[version='>=0.14'] -> cryptography[version='>=1.9,>=2.1.4,>=2.2.1'] -> cffi[version='>=1.7'] -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel default: urllib3 -> pyopenssl[version='>=0.14'] -> cryptography[version='>=1.9,>=2.1.4,>=2.2.1'] -> cffi[version='>=1.7'] -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel default: cryptography -> cffi[version='>=1.7'] -> pycparser -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel default: ruamel_yaml -> python[version='>=3.5,<3.6.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip -> wheel default: python=3.5 -> pip -> wheel default: pip -> wheel default: tqdm -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel default: pysocks -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip -> wheel default: pycosat -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0,>=3.7,<3.8.0a0'] -> pip -> wheel default: six -> python[version='>=2.7,<2.8.0a0,>=3.5,<3.6.0a0,>=3.6,<3.7.0a0'] -> pip -> wheel
5) default: Note: Some input files use or override a deprecated API. default: Note: Recompile with -Xlint:deprecation for details. default: Note: Some input files use unchecked or unsafe operations. default: Note: Recompile with -Xlint:unchecked for details.
6) default: Note: /home/vagrant/mongo-hadoop/examples/shakespeare/src/main/java/com/mongodb/hadoop/examples/shakespeare/PrepareShakespeare.java uses or overrides a deprecated API. default: Note: Recompile with -Xlint:deprecation for details.
7) default: warning: install_lib: 'build/lib' does not exist -- no Python modules to install
8) default: /tmp/vagrant-shell: line 321: /home/vagrant/Agile_Data_Code/install/phantomjs.sh: No such file or directory
thank you
Vagrantup.log