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rkajitani / MetaPlatanus

De novo metagenome assembler
GNU General Public License v3.0
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Scaffold exception #13

Open jxmelody opened 10 months ago

jxmelody commented 10 months ago

Dear authors,

Thanks for your great work! I am trying this method for hybrid assembling our paired-end reads and Pacbio long reads. However, I encountered the error after having run for 3 hours:

$ cat out_intermediate/3_iterative_asm/out.iteLog 
MetaPlatanus version: 1.3.1
metaplatanus_core iterate -tmp . -c initial_merged.fa initial_mergedJunctionKmer.fa -k out_kmer_occ.bin -t 64 -m 500 -IP1 /Data/5G_1.fq.gz /Data/5G_2.fq.gz -p /Data/S1_1.2G.fastq -o out 

Error(13): Error, Scaffold exception!!
meta_platanus scaffold command failed.

Do you have any idea how to solve this error? Thank you!