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rkajitani / MetaPlatanus

De novo metagenome assembler
GNU General Public License v3.0
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High memory usage #5

Open tiancai128 opened 2 years ago

tiancai128 commented 2 years ago

when I only used a 15G*2 PE data to run MetaPlatanus without any naonpore or PacBio data, a high High memory usage (nearly 500 G) occurred, than MetaPlatanus crashed (cpu=0, memory=99%). I have no naonpore or PacBio data, I want to try whether MetaPlatanus provide more nice assembly result than Metaspades. This is my log out.assembleLog.txt

rkajitani commented 2 years ago

Thank you for sending the log. MetaPlatanus tries to use a memory space as large as specified (-m) to speed up, but unfortunately it may use more spaces because of memory leaks.

Could you please specify the smaller value for -m? (e.g., -m 250)