Closed Krasnopeev closed 2 years ago
Thank you for reporting. Unfortunately, MetaPlatanus requires more memory than it could use. A memory limit can be specified by -m option (default, 0.75 * available_memory), and MetaPlatanus used "-m 18.75" in your environment. So, more memory (RAM) amount may be needed to finish the assembly of your data. A larger value of "-min_cov_contig" option will reduce the memory usage, but the size of the resulting assembly will also decrease. I'm sorry to bother you.
Oh, ok! I will try with different memory options. thanks!
Hi!
MetaPlatanus was installed with conda as described in manual without any issues.
I used PE 2x200bp Illumina reads and run ended with error. Here is log file content:
used command:
also here is log file from folder
metaplat_out_intermediate
metaplat_out.assembleLog.txtHow to resolve it? Thanks!