I summarized part of my attempts to install and use MetaPlatanus here but in order to be more concrete here are two ways I tried to solve this.
ATTEMPTING TO COMPILE ON MY OWN
I used mamba and installed all the dependencies in a new environment.
I manually installed NextPolish, I added the path to .bashrc file and I checked that it worked.
Error: contig_assembly error!
Inappropriate ioctl for device
I am trying to solve this in order to assemble several metagenomes. Could you help me to resolve this? I can provide more logs or attempt more things just let me know. Thanks for your help.
I summarized part of my attempts to install and use MetaPlatanus here but in order to be more concrete here are two ways I tried to solve this.
ATTEMPTING TO COMPILE ON MY OWN
I used mamba and installed all the dependencies in a new environment. I manually installed NextPolish, I added the path to
.bashrc
file and I checked that it worked.Here is the environment
That didn't work I got an error with tgsgapcloser_mod but even when I used
metaplatanus -IP1 PE_1.fq PE_2.fq -ont ONT.fq -no_tgsgapcloser -o ZERO
ATTEMPTING TO CREATE A CONDA ENVIRONMENT AND USING A CONDA RECIPE
Here is the conda list
I get the same error
I am trying to solve this in order to assemble several metagenomes. Could you help me to resolve this? I can provide more logs or attempt more things just let me know. Thanks for your help.