Feature filter indels - Githubissues

rki-mf1 / CoVpipe2

SARS-CoV-2 genome reconstruction for Illumina data in Nextflow

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Closed MarieLataretu closed 1 year ago

MarieLataretu commented 1 year ago

indels can be filtered before consensus generation by their fraction
can prevent frameshifts, because IUPAC can not model base-or-gap cases and always includes the indel
activated for event types ins, del and complex