The current bioconda recipe of amplisim pulls the tarball of the latest release. The tarball does not include submodules, therefore I implemented a rather cruel fix in the build.sh to clone and reset dependencies. See these lines of code.
Ideal solution:
Upgrade the Makefile in a way s.t. the system wide htslib is used if there is not recursive clone of the submodules.
Problem:
The current bioconda recipe of amplisim pulls the tarball of the latest release. The tarball does not include submodules, therefore I implemented a rather cruel fix in the
build.shto clone and reset dependencies. See these lines of code.Ideal solution:
Upgrade the
Makefilein a way s.t. the system wide htslib is used if there is not recursive clone of the submodules.