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rki-mf1 / amplisim

Plain simple amplicon sequence simulator for in-silico genomic sequencing assays
Apache License 2.0
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Providing a seed (-s) still returns non-deterministic output #3

Closed Krannich479 closed 1 year ago

Krannich479 commented 1 year ago

Minimum (non-)working example: 

 ./amplisim -s 479 -o testdata/out.fa testdata/testref.fa testdata/testprimer.bed
 mv testdata/out.fa testdata/out2.fa
 ./amplisim -s 479 -o testdata/out.fa testdata/testref.fa testdata/testprimer.bed
 diff testdata/out.fa testdata/out2.fa

returns 

41,42d40
< >amplicon_0_20
< GGGCATACGTAGCTGAC

but diff should return nothing, as both outputs should be the same. This makes case testing impossible currently.

Krannich479 commented 1 year ago

solved with commit 6c688cbe2837fa40f713b6ccc313dd4f18e89f1c