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rki-mf1 / amplisim

Plain simple amplicon sequence simulator for in-silico genomic sequencing assays
Apache License 2.0
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Output should be SAM format to blend in with samtools #8

Open Krannich479 opened 1 year ago

Krannich479 commented 1 year ago

Samtools ampliconclipper and ampliconstats work with BAM files. So, it might be advisable to return amplicons in SAM format over FASTA (current solution) to:

  1. Be able to pipe results into samtools
  2. Report variation per replicate