Closed Krannich479 closed 5 months ago
PROBLEM:
The final stats report by som.py misses a first column in the header. It's misleading when converting and looking at the CSV table, e.g. with
sed 's/,/\t/g' sample01.sompy.stats.csv | column -t | less -S
because all the lines below the header are shifted with respect to the header.
FIX:
The first column of the header needs content, e.g. "idx" in the example below:
idx,type,total.truth,total.query,tp,fp,fn,... 0,indels,140,113,113,0,27,0,0,... 1,SNVs,320,305,305,0,15,0,0,... 5,records,460,422,418,4,42,0,0,...
IMPLEMENTATION:
Add a process that modifies the header after the som.py process.
som.py
PROBLEM:
The final stats report by som.py misses a first column in the header. It's misleading when converting and looking at the CSV table, e.g. with
because all the lines below the header are shifted with respect to the header.
FIX:
The first column of the header needs content, e.g. "idx" in the example below:
IMPLEMENTATION:
Add a process that modifies the header after the
som.pyprocess.