Currently a lot of time is spent running QC (nanoplot, multiqc) on my samples. I'm not interested in this output and I would like to be able to skip these steps and save the time. I think it is debatable whether QC even belongs in clean but that is for the devs to decide.
For now, I would love something like a --skip-qc argument to skip basically everything from the qc.nf module.
Currently a lot of time is spent running QC (nanoplot, multiqc) on my samples. I'm not interested in this output and I would like to be able to skip these steps and save the time. I think it is debatable whether QC even belongs in clean but that is for the devs to decide.
For now, I would love something like a
--skip-qcargument to skip basically everything from the qc.nf module.