Differences in MultiQC report between BBDUK and minimap2 runs

rki-mf1 / clean

A nextflow pipeline for decontamination of short reads, long reads and contigs

BSD 3-Clause "New" or "Revised" License

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Differences in MultiQC report between BBDUK and minimap2 runs #98

Open hoelzer opened 4 months ago

hoelzer commented 4 months ago

I ran the same command but once with BBDUK. I noticed that the MultiQC reports are quite different. The BBDUK looks nicer in terms of file names and summary statistics.

E.g

grafik

while such a plot is missing when using minimap2.

There is this samtools flagstat report instead which is not so nice

grafik