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rki-mf1 / covsonar

A database-driven system for handling genomic sequences of SARS-CoV-2 and screening genomic profiles.
GNU General Public License v3.0
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--count not working #11

Closed silenus092 closed 2 years ago

silenus092 commented 3 years ago

In GitLab by @Alice_Wittig on May 28, 2021, 15:39

I'm using covSonar version 0.0.10 and the database version 2 from 25.5.21. If I use the --count flag I get the CSV output instead.

For example: 

>>>python sonar.py match -i S:V362F --db rki_25_5_21.db --count
accession,description,lab,source,collection,gisaid,ena,zip,date,lineage,seqhash,dna_profile,aa_profile
IMS...
>>>python sonar.py match -i S:V362F --date 2021-02-20:2021-02-20 --db rki_25_5_21.db --count
*** no match ***
silenus092 commented 3 years ago

In GitLab by @s.fuchs on May 30, 2021, 21:04

Thx for this report! The bug has been fixed in v1.0.0