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rki-mf1 / covsonar

A database-driven system for handling genomic sequences of SARS-CoV-2 and screening genomic profiles.
GNU General Public License v3.0
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Installation under Mac fails due to unsolvable conda dependencies #14

Closed silenus092 closed 2 years ago

silenus092 commented 3 years ago

In GitLab by @hoelzer on Jun 21, 2021, 21:12

I run into this bc/ I wanted to try something on my mac :) 

conda env create -n sonar -f covsonar/sonar.env.yml

Collecting package metadata (repodata.json): done
Solving environment: failed

ResolvePackageNotFound:
  - libstdcxx-ng=9.3.0
  - libgfortran-ng=9.3.0
  - _openmp_mutex=4.5
  - libgomp=9.3.0
  - libgcc-ng=9.3.0

I removed these dependencies from the env file and then installation worked. Additionally, I don't think that all of these lib dependencies are really necessary and thus the environment file could be cleaned to the really necessary dependencies (emboss, biopy, ...)?

silenus092 commented 3 years ago

In GitLab by @hoelzer on Jun 21, 2021, 21:14

mentioned in commit ef0bb97db3eebf3c4c5a292194229860de60deec

silenus092 commented 3 years ago

In GitLab by @s.fuchs on Aug 24, 2021, 08:21

I agree, I was lazy and just exported my env to a yaml. I will cleanup the mess and provide a minimal env defintion.

silenus092 commented 3 years ago

In GitLab by @s.fuchs on Aug 24, 2021, 08:22

mentioned in commit f5de2ebb3263c8fd0a6fb0101b93f4c07de7c860