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rki-mf1 / covsonar

A database-driven system for handling genomic sequences of SARS-CoV-2 and screening genomic profiles.
GNU General Public License v3.0
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Get results for any AA substitution does not work #18

Closed silenus092 closed 2 years ago

silenus092 commented 3 years ago

In GitLab by @hoelzer on Sep 23, 2021, 13:56

I tried

python3 sonar.py match --tsv --db rki.db --lineage  B.1.617.2 AY.1 AY.2 AY.3 AY.3.1 AY.4 AY.5 AY.5.1 AY.5.2 \
AY.6 AY.7 AY.7.1 AY.7.2 AY.8 AY.9 AY.10 AY.11 AY.12 AY.13 AY.14 AY.15 AY.16 AY.17 AY.18 AY.19 AY.20 AY.21 AY.22 \
AY.23 AY.24 AY.25 AY.26 AY.27 AY.28 AY.29 AY.30 AY.31 AY.32 --include S:K417X --count

which results in 0 hits. However, something like --include S:K417N gives me hits back.

silenus092 commented 2 years ago

This problem is already solved in the latest version of covSonar V.1 and V.2

Feel free to reopen if the problem still exists. Thank you