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rki-mf1 / covsonar

A database-driven system for handling genomic sequences of SARS-CoV-2 and screening genomic profiles.
GNU General Public License v3.0
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Add additional ORFs #2

Closed silenus092 closed 2 years ago

silenus092 commented 3 years ago

In GitLab by @HartkopfF on Apr 13, 2021, 15:10

At the moment, only some ORFs are supported. For example, ORF1ab:XXXX is supported but not ORF1a:XXXX or ORF1b:XXXX. It would be helpful to support all ORFs to make the selection easier. Is it a lot of work to implement that?

silenus092 commented 3 years ago

In GitLab by @s.fuchs on Apr 14, 2021, 09:09

Hi Felix,

covsonar uses the official annotation provided by NCBI. However, you can easily adapt the GFF file in the lib folder, which is not a big deal. But the database has to be rebuilt to apply the changes. Thus, I will soon provide an update for this!

silenus092 commented 3 years ago

In GitLab by @s.fuchs on May 30, 2021, 20:10

ORF1b is now fully supported. Thank you!