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rki-mf1 / covsonar

A database-driven system for handling genomic sequences of SARS-CoV-2 and screening genomic profiles.
GNU General Public License v3.0
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HotFix - [merged] #46

Closed silenus092 closed 2 years ago

silenus092 commented 2 years ago

In GitLab by @kunaphas.kon on Feb 4, 2022, 15:49

_Merges dev/hotfix -> master

sonar.py at line 223 , I add continue function instead abort the whole operation 

if unvalid_letters:
print("[Skip] input error: " + acc + " contains non-IUPAC characters (found: " + ", ".join(unvalid_letters) + ")")
continue
# sys.exit("input error: " + acc + " contains non-IUPAC characters (found: " + ", ".join(unvalid_letters) + ")")
silenus092 commented 2 years ago

In GitLab by @s.fuchs on Feb 4, 2022, 16:04

mentioned in commit c2f87607de0968b6a94ba36feb650a1f04157241