The following warnings are reported when running selector.py (all based on a new panda version):
reading the data frame
Selector.py:216: DtypeWarning: Columns (6) have mixed types. Specify dtype option on import or set low_memory=False.
df_variants = pd.read_csv(covSonar_output, sep="\t")
swapaxes command
/opt/homebrew/Caskroom/miniconda/base/lib/python3.12/site-packages/numpy/core/fromnumeric.py:59: FutureWarning: 'DataFrame.swapaxes' is deprecated and will be removed in a future version. Please use 'DataFrame.transpose' instead.
return bound(*args, **kwds)
soon to be deprecated command
Selector.py:127: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise an error in a future version of pandas. Value '156' has dtype incompatible with float64, please explicitly cast to a compatible dtype first.
_df.loc[idx, "aa_pos_ref_start"] = _pattern[1]
The following warnings are reported when running selector.py (all based on a new panda version):
reading the data frame
swapaxescommandsoon to be deprecated command