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rki-mf1 / workshop-nanopore-bioinformatics

Main resource for practical introductions to long-read bioinformatics.
GNU General Public License v3.0
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Test via Docker container #6

Open hoelzer opened 1 year ago

hoelzer commented 1 year ago

In case we want to add that somewhere or as a README

docker run -it --rm condaforge/mambaforge:latest /bin/bash

# rename will be needed later and is not in the minimal base image
apt-get update
apt-get install rename

# add repository channels for bioconda
conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge

# get the code and run the test
git clone https://github.com/rki-mf1/workshop-nanopore-bioinformatics.git
cd workshop-nanopore-bioinformatics
./test.sh