Open MikeAxtell opened 3 months ago
Hi Mike,
I was going through this today and it seems I left out a critical part of the conda create command that should create the environment. It should actually be:
conda env create -n mirador -f environment.yml
I'll update the README further to accommodate all of your suggestions. Thank you for all of these!
Reza
Hi Reza, I found some issues with using
conda
to installmiRador
dependencies that you may want to look at:conda create -n mirador -f environment.yml
: This command fails with recent versions ofconda
because the-f
switch is invalid. I believe it is--file
on my system. I am runningconda
version 24.1.2 installed by miniconda for linux 64 centOS.-f
to--file
also fails with errorCondaValueError: could not parse 'name: mirador' in: environment.yml
.conda
instructions given in the README, after theconda create --name mirador
step, users should then be told activate the environment byconda activate mirador
. Otherwise, naive users may end up installing the dependencies into their base environment, or some other place where it doesn't belong. I suggest adding that step in to the README.conda install
commands will fail for users whose.condarc
file sets channel priority tostrict
. Users of Bioconda will already have channel_priority set tostrict
because that is a requirement of Bioconda. To use your stated instructions, such users need to edit their.condarc
file to set channel_priority toflexible
(and then switch it back when done).conda install -c conda-forge ghostscript=9.54.0 perl=5.32.1 pypdf2=2.11.1 typing_extensions-4.5.0
has a typo that will cause it to fail.typing_extensions-4.5.0
should be edited totyping_extensions=4.5.0
Hope this helps, I'm looking forward to giving miRador a spin!