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rkweku / miRador

Plant miRNA identification tool that utilizes a variety of filters to validate predicted miRNAs
GNU General Public License v3.0
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ConnectionRefusedError: [Errno 111] Connection refused #6

Closed Devin561 closed 2 years ago

Devin561 commented 2 years ago

Dear professor,

When we run miRador, we got the problem that miRbase cannot be connected. The error information is below. How can we solve this problem?

Thank you very much!

File "./miRador-master/miRador/setupMiRBase.py", line 26, in checkNeedUpdate ftp = ftplib.FTP("mirbase.org") ConnectionRefusedError: [Errno 111] Connection refused

rkweku commented 2 years ago

Hi Devin,

I am actually currently awaiting a response from miRBase with regards to this issue. The FTP connection is no longer working properly and I am hoping to get a resolution from them on this soon. I'll write back as soon as I hear back.

Best, Reza

rkweku commented 2 years ago

Hi there. Sorry for my delay, but after getting in touch with miRBase, I found that there was an issue with the FTP server and they had to force downloads via html. This required some modifications to the code and I've just found myself too busy lately, so I ultimately decided to store the necessary mirbase files to this repo and will remove once the ftp issue is resolved. This should now allow for runs of miRador to complete.

Best, Reza Hammond

Devin561 commented 2 years ago

Hi Reza, Thank you for your patience in helping us to solve this problem, and now we have successfully run miRador using the updated version. We believe miRador will get more people's preferred software for identifying plant miRNA.

Best Regards！