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rli012 / GDCRNATools

GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC
Apache License 2.0
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Add organized=FALSE to the gdcRNAMerge() function and it still doesn't work. #10

Open zhuo1023 opened 5 years ago

zhuo1023 commented 5 years ago

I'm trying to merge RNAseq data which was downloaded from the Web Browser and unzipped to the "RNEseq2". But when I run the code, the error still exists:

rnaCounts <- gdcRNAMerge(metadata = metaMatrix.RNA, path = 'RNAseq2', data.type = 'RNAseq', organized = FALSE)

Error in open.connection(file, "rt") : cannot open the connection In addition: Warning message: In open.connection(file, "rt") : cannot open compressed file 'RNAseq2/e3908da4-f4c8-43b8-b01d-73bd5fafaa96/dbb50b30-9856-4a56-91e1-d31ad106fd48.htseq.counts.gz', probable reason 'No such file or directory'

Can you help me to fix it?

Thank you very much.