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rli012 / GDCRNATools

GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC
Apache License 2.0
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Add `prettydoc` to `Suggests` #24

Open martin-g opened 11 months ago

martin-g commented 11 months ago

Solves the following R CMD check error in Bioc 3.18:

* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘index.Rmd’ using rmarkdown
Error: processing vignette 'index.Rmd' failed with diagnostics:
there is no package called ‘prettydoc’
--- failed re-building ‘index.Rmd’

It seems prettydoc is a transitive dependency that must be explicitly declared for Bioc 3.18, because of _R_CHECK_SUGGESTSONLY=true

See https://support.bioconductor.org/p/9153573/#9153581 for more details.

martin-g commented 11 months ago

Friendly ping!

hpages commented 10 months ago

@rli012 Can you please take a look at this PR? Please be aware that Bioconductor will deprecate unmaintained packages. Don't hesitate to let me know or ask on the bioc-devel mailling list if you have any questions or concerns about this. Thanks!