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rli012 / GDCRNATools

GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC
Apache License 2.0
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Error in download.KEGG.Path(species) : 'species' should be one of organisms listed in 'http://www.genome.jp/kegg/catalog/org_list.html'... #8

Open jxshi opened 5 years ago

jxshi commented 5 years ago

Hi,

I was using GDCRNATools to perform 'Functional enrichment analysis'. Here is the command that I used: enrichOutput <- gdcEnrichAnalysis(gene = rownames(deALL), simplify = TRUE).But the following error popped up. I have checked instructions of gdcEnrichAnalysis command, but I did not get how to setup species in gdcEnrichAnalysis(). Can you check for me please? Thank you in advance!

### This step may take a few minutes ###

Step 1/5: BP analysis done!
Step 2/5: CC analysis done!
Step 3/5: MF analysis done!
Error in download.KEGG.Path(species) : 
  'species' should be one of organisms listed in 'http://www.genome.jp/kegg/catalog/org_list.html'...

Best,

Jianxiang