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rlorigro / GFAse

Tool for globally phasing diploid assembly graphs with orthogonal data
Mozilla Public License 2.0
36 stars 4 forks source link

Error while building, cannot find config.guess and config.sub #11

Closed MartinSchmitz95 closed 1 year ago

MartinSchmitz95 commented 1 year ago

Hello, After installing all dependencies I get following error while building the project.

/GFAse/build/_deps/project_htslib-src configure: error: cannot find required auxiliary files: config.guess config.sub make[2]: *** [CMakeFiles/BUILD_HTS.dir/build.make:73: CMakeFiles/BUILD_HTS] Error 1 make[1]: *** [CMakeFiles/Makefile2:260: CMakeFiles/BUILD_HTS.dir/all] Error 2 make: *** [Makefile:91: all] Error 2

rlorigro commented 1 year ago

Hi Martin,

Could you share some details about your operating system and version?

MartinSchmitz95 commented 1 year ago

Hello Ryan,

thank you for your answer. My operating system is Ubuntu 20.04.2 LTS

cmake version 3.18.2 gcc version 9.4.0 zlib1g-dev, Version: 1:1.2.11.dfsg-2ubuntu1.5 libbz2-dev, Version: 1.0.8-2 libcurl4-openssl-dev, Version: 7.68.0-1ubuntu2.18 libjansson-dev, Version: 2.12-1build1

MartinSchmitz95 commented 1 year ago

Sorry, I accidentally closed the issue.

rlorigro commented 1 year ago

Hi Martin, I modernized the Samtools build process and made some other refactors/changes in the CMakeLists in the build-debug branch. Could you try checking out that branch, removing your old build directory, and seeing if it builds for you now?

MartinSchmitz95 commented 1 year ago

Hi Ryan, the change resolves the issue. Thank you! I still have some trouble building it but this issue is definitely solved with the change.

rlorigro commented 1 year ago

Ok well feel free to open another issue if you are unable to resolve your problem