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rlorigro / GFAse

Tool for globally phasing diploid assembly graphs with orthogonal data
Mozilla Public License 2.0
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Add CLI support for custom contact map input #24

Closed rlorigro closed 8 months ago

rlorigro commented 8 months ago

modified the CLI parser to optionally accept a comma-separated contact map of the format:

name_a,name_b,weight 
[string],[string],[int32]

Where name_a and name_b correspond to node name (S lines) in the GFA, and weight is a simple integer count for number of contacts between any pair of nodes.