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rmcclosk
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morin-rotation
Rotation with Morin lab.
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Add LOH and other CNA to database
#49
rmcclosk
opened
9 years ago
0
Segment plots for each patient
#48
rmcclosk
opened
9 years ago
0
Run ABSOLUTE on TITAN segments
#47
rmcclosk
opened
9 years ago
1
Update shiny to use prevalence in VAF corrections
#46
rmcclosk
opened
9 years ago
0
Changes to presentation
#45
rmcclosk
closed
9 years ago
0
VAF histograms
#44
rmcclosk
closed
9 years ago
0
Confidence intervals on VAF for shiny
#43
rmcclosk
opened
9 years ago
1
Evaluate a paper
#42
rmcclosk
opened
9 years ago
0
Scatterplots of tumor vs. tumor VAF's
#41
rmcclosk
opened
9 years ago
0
ABSOLUTE is expecting a strange MAF file
#40
rmcclosk
closed
10 years ago
0
Missing samples
#39
rmcclosk
closed
9 years ago
0
shiny stuff
#38
rmcclosk
closed
10 years ago
1
More ExomeCNV DLBCL
#37
rmcclosk
closed
10 years ago
2
Cell lines have been excluded
#36
rmcclosk
closed
10 years ago
1
Strelka VAF don't match python script
#35
rmcclosk
closed
9 years ago
1
More filtering for shiny
#34
rmcclosk
closed
10 years ago
0
TITAN on exome data
#33
rmcclosk
closed
10 years ago
0
ABSOLUTE on segments
#32
rmcclosk
closed
10 years ago
2
Plot variant allele fractions through time
#31
rmcclosk
closed
10 years ago
0
Run TITAN on Exome data
#30
rmcclosk
closed
10 years ago
9
Missing HMMcopy results
#29
rmcclosk
closed
10 years ago
1
HMMcopy inconsistent calls on intra-patient samples
#28
rmcclosk
closed
9 years ago
1
Verify tumor purity with variant allele fractions from Strelka
#27
rmcclosk
closed
10 years ago
0
Plot segments across genes only
#26
rmcclosk
closed
9 years ago
1
HMMcopy wig files have the wrong number of lines
#25
rmcclosk
closed
10 years ago
0
Run HMMcopy with bin size 10000
#24
rmcclosk
closed
10 years ago
0
HMMcopy missing samples
#23
rmcclosk
closed
10 years ago
0
Lumpy is using a different version of python
#22
rmcclosk
closed
9 years ago
0
Messy CNV calls on some samples
#21
rmcclosk
closed
10 years ago
2
Realism of colorectal CNV results
#20
rmcclosk
closed
9 years ago
2
Missing paired DLBCL samples
#19
rmcclosk
closed
10 years ago
1
HMMcopy did not run for patients 01-014 or 01-046
#18
rmcclosk
closed
10 years ago
1
ExomeCNV did not run for patient 01-046
#17
rmcclosk
closed
10 years ago
0
GATK barfs on DLBCL bams
#16
rmcclosk
closed
10 years ago
3
Plots of % exome with CNV's vs. tumor purity
#15
rmcclosk
closed
10 years ago
1
ExomeCNV on DLBCL data
#14
rmcclosk
closed
10 years ago
2
Galaxy tools for ExomeCNV and HMMcopy
#13
rmcclosk
closed
9 years ago
0
Lumpy to check minor copy number variants
#12
rmcclosk
closed
10 years ago
1
Error in HMMcopy
#11
rmcclosk
closed
10 years ago
3
hg19 mappability file has the wrong number of bins
#10
rmcclosk
closed
10 years ago
1
Don't redo ExomeCNV analyses already done
#9
rmcclosk
closed
10 years ago
0
ExomeCNV requires X11 support
#8
rmcclosk
closed
10 years ago
1
run HMMCopy on genesis
#7
rmcclosk
closed
10 years ago
0
do ExomeCNV analysis on genesis
#6
rmcclosk
closed
10 years ago
1
readCounter segfaults on xhost09 and genesis
#5
rmcclosk
closed
10 years ago
5
readCounter fails on apollo cluster
#4
rmcclosk
closed
10 years ago
1
Tumor purity
#3
rmcclosk
closed
10 years ago
2
Corruption of BAM files
#2
rmcclosk
closed
10 years ago
1
Reading list
#1
rmcclosk
closed
9 years ago
0