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rmflight
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categoryCompare
Github repo of the categoryCompare meta-analysis package
http://bioconductor.org/packages/devel/bioc/html/categoryCompare.html
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use new RCy3 functionality
#36
rmflight
closed
6 years ago
2
Switch to RCy3 from RCytoscape
#35
rmflight
closed
6 years ago
0
profiling graph calculations
#34
rmflight
opened
9 years ago
0
check v2 graph with original
#33
rmflight
opened
9 years ago
0
summarize comparisons
#32
rmflight
opened
9 years ago
0
set individual cutoffs
#31
rmflight
opened
9 years ago
0
creation of hypergeometric features should cull annotation
#30
rmflight
opened
9 years ago
0
add bioconductor time badge to readme
#29
rmflight
closed
9 years ago
0
annotation_combinations should take a logical matrix
#28
rmflight
opened
9 years ago
0
summary methods for various classes
#27
rmflight
opened
9 years ago
0
re-implement cytoscape methods
#26
rmflight
opened
9 years ago
0
pie charts
#25
rmflight
opened
9 years ago
0
unique enrichment combinations
#24
rmflight
closed
9 years ago
1
enriched_result constructor
#23
rmflight
closed
9 years ago
1
bug in current code getting annotation id
#22
rmflight
closed
9 years ago
2
create test data for v2
#21
rmflight
opened
9 years ago
0
possible workflows for graph / table generation
#20
rmflight
closed
9 years ago
6
convert to travis-r
#19
rmflight
opened
9 years ago
0
color schemes
#18
rmflight
opened
9 years ago
0
build combined_enrichments incrementally according to user prefs
#17
rmflight
opened
9 years ago
0
Redesign: Enrichment
#16
rmflight
opened
9 years ago
0
Redesign: Comparisons first, enrichment after
#15
rmflight
closed
9 years ago
6
ANY: create easy annotation generation methods for params objects
#14
rmflight
opened
9 years ago
0
saving copy of annotation from enrichment
#13
rmflight
opened
10 years ago
0
reverse match possible lists against real lists
#12
rmflight
opened
10 years ago
0
always use matrix rep of significant lists
#11
rmflight
opened
10 years ago
0
easily save genes annotated to Terms
#10
rmflight
opened
10 years ago
1
add cytoutnodes to vignette
#9
rmflight
opened
10 years ago
0
add github repo to url, website, and vignette
#8
rmflight
closed
9 years ago
0
easily get list associations
#7
rmflight
opened
10 years ago
1
Warning: undocumented methods
#6
rmflight
closed
10 years ago
1
Note about use of Biobase
#5
rmflight
closed
10 years ago
1
Note about namespace
#4
rmflight
closed
10 years ago
1
AsIs Warning in check
#3
rmflight
opened
10 years ago
1
proper breaking edges
#2
rmflight
opened
11 years ago
0
graph creation crashes with one or fewer annotations
#1
rmflight
closed
12 years ago
1