Fix `get_ukb_data_dict()` and `get_ukb_codings()`

rmgpanw / ukbwranglr

R package for UK Biobank data wrangling.

https://rmgpanw.github.io/ukbwranglr/

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Fix `get_ukb_data_dict()` and `get_ukb_codings()` #8

Open rmgpanw opened 6 months ago

rmgpanw commented 6 months ago

These files have been removed from the UKB data showcase website.

[x] Temporarily update functions to download the old files from https://github.com/rmgpanw/ukb_backup_files
[ ] Rewrite functions to recreate these files from those available at https://biobank.ctsu.ox.ac.uk/crystal/exinfo.cgi?src=accessing_data_guide (see "Data Dictionaries and Encodings")

thiendattran commented 6 months ago

Hello, thank you for the package and fixing the issues with the download link. However, I would like to ask that when I ran the tidy_clinical_events using this new dictionary from the backup. I encountered error "Columns instance and array don't exist.".

rmgpanw commented 6 months ago

Hi @thiendattran, thanks for your message. tidy_clinical_events() seems to be working for me. Can you please provide a reproducible example (perhaps you could try adapting the ukbwranglr getting started vignette) and the output from sessionInfo()? Also, do other functions like make_data_dict() and read_ukb() work for you?