If I run RepeatMasker with "qsub", I get this error message:
Species "..." is not known to RepeatMasker.
But if I run it without qsub, it works fine.
The reason, I think, is that h5py isn't found when I use qsub. It seems RepeatMasker swallows the error message from famdb.py: it would be good to show this message.
RepeatMasker version 4.1.5.
uname -a
Linux ln1 3.10.0-693.17.1.el7.x86_64 #1 SMP Thu Jan 25 20:13:58 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux
Have you installed RepBase RepeatMasker Edition, or the full Dfam database?
No
rmhubley
commented
1 year ago
If I run RepeatMasker with "qsub", I get this error message: Species "..." is not known to RepeatMasker.
But if I run it without qsub, it works fine.
The reason, I think, is that h5py isn't found when I use qsub. It seems RepeatMasker swallows the error message from famdb.py: it would be good to show this message.
RepeatMasker version 4.1.5.
uname -a Linux ln1 3.10.0-693.17.1.el7.x86_64 #1 SMP Thu Jan 25 20:13:58 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux