rmhubley / RepeatMasker

RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
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Could not create repeat landscape custom Satellite -lib, Error; Not enough columns given to draw the requested chart. createRepeatLandscape.pl #252

Closed salmanento closed 2 months ago

salmanento commented 3 months ago

I am creating repeat landscape using command;

./createRepeatLandscape.pl -div vv.divsum -g 3751000000 > vv_div.html Parsing vv.divsum PocSat10-847 will not be graphed! TinSat04-710 will not be graphed! VviSat04-101 will not be graphed! VviSat02-83 will not be graphed! VviSat11-454 will not be graphed! BteSat01-6989 will not be graphed! PocSat02-338 will not be graphed! SgrSat06-180 will not be graphed! TinSat05-7079 will not be graphed! VviSat03-75 will not be graphed! SgrSat05-1590 will not be graphed! MgrSat03-6758 will not be graphed! AyuSat03-4525nt will not be graphed! PtrSat01-158 will not be graphed! VviSat05-80 will not be graphed! VviSat01-101 will not be graphed! SgrSat04-1485 will not be graphed! VpiSat01-53 will not be graphed! PmoSat03-1539 will not be graphed! MgrSat02-361 will not be graphed! PocSat05-136 will not be graphed! PocSat08-3438 will not be graphed! VviSat06-31 will not be graphed! PmoSat05-147 will not be graphed! VpiSat04-168 will not be graphed! YcoSat01-247 will not be graphed! SgrSat03-7268 will not be graphed! VpiSat02-51 will not be graphed! VpiSat03-895 will not be graphed! FgoSat04-1891 will not be graphed! GguSat01-560 will not be graphed! PocSat09-1176 will not be graphed!

In response I get .html file saying Not enough columns given to draw the requested chart. Please guide

salmanento commented 2 months ago

I got the solution, All satDNA names should be added in the createRepeatLandscape.pl file as per respective .divsum output file. image