Universal Genome Analyst (uga) is an open, flexible, and efficient tool for the distribution, management, and visualization of whole genome data analyses.
the freq function calculates the minimum frequency. Thus, if cases have > 50% and ctrls have < 50%, they will refer to different alleles than the effect allele, a1. Need to hash out the definitions and make sure they all refer to the same effect allele.
rmkoesterer
commented
7 years ago
the freq function calculates the minimum frequency. Thus, if cases have > 50% and ctrls have < 50%, they will refer to different alleles than the effect allele, a1. Need to hash out the definitions and make sure they all refer to the same effect allele.