search

rmkoesterer / uga

Universal Genome Analyst (uga) is an open, flexible, and efficient tool for the distribution, management, and visualization of whole genome data analyses.
GNU General Public License v3.0
2 stars 1 forks source link

duplicate snps cause duplicate rows in output #8

Open rmkoesterer opened 8 years ago

rmkoesterer commented 8 years ago

figure out how to keep duplicate snps from generating repeated rows of results

rmkoesterer commented 8 years ago

add a check for duplicate variants before the first merge or after first creating a dataframe, then log a warning and remove the duplicate from the dataframe

rmkoesterer commented 8 years ago

Also, make sure a users --region-file doesn't have duplicates