Seurat default number of variable genes too large

rnabioco / clustifyr

Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets

https://rnabioco.github.io/clustifyr/

MIT License

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Closed raysinensis closed 3 years ago

raysinensis commented 3 years ago

Seurat V2 was a smaller number of genes depending on the data V3 was top 2000 V4 appears to default to top 3000

Should probably change default behavior of clustify to use a smaller number