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rnabioco / clustifyr

Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
https://rnabioco.github.io/clustifyr/
MIT License
103 stars 14 forks source link

invalid URL #393

Closed jayhesselberth closed 1 year ago

jayhesselberth commented 1 year ago

I'm seeing an invalid URL in the docs. Did we set this up? Or is this a public resource?

> urlchecker::url_check()
✖ Error: man/sce_small.Rd:11:6 : Invalid URI scheme
\url{"https://scrnaseq-public-datasets.s3.amazonaws.com/scater-objects/segerstolpe.rds"}
kriemo commented 1 year ago

It's from here, but the dataset download link is now invalid: https://hemberg-lab.github.io/scRNA.seq.datasets/human/pancreas/#segerstolpe

kriemo commented 1 year ago

There is R code to document how it was made that we could reference: https://github.com/hemberg-lab/scRNA.seq.datasets/blob/master/R/segerstolpe.R

jayhesselberth commented 1 year ago

closed by 1131c12961a4d0965e9780ff28c211c07ab79f7e