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rnabioco / djvdj

An R package to analyze single-cell V(D)J data
https://rnabioco.github.io/djvdj
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10x data - multiplexed antigen recognition #14

Open raysinensis opened 3 years ago

raysinensis commented 3 years ago

A new way of exploring immunity: linking highly multiplexed antigen recognition to immune repertoire and phenotype report data

Binding specificity only carried as a binarized matrix, unfortunately.

raysinensis commented 3 years ago

dropbox link here https://www.dropbox.com/sh/p41l7d7pmmds38o/AAAtDjiQIw090Co_Mnw43Ylqa?dl=0 the clustering step is very very slow?

sheridar commented 3 years ago

The clustering function is definitely slow. Actually all the functions are generally slow, and need to be streamlined