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rnabioco / ont-pipeline

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Pre-processing after re-basecalling requires full path #2

Open lkwhite opened 3 years ago

lkwhite commented 3 years ago

For reasons that remain opaque to me, 00_preprocess.sh fails to complete after re-basecalling with Guppy unless you specify the full path to the fast5 and fastq files. Unless I'm missing something, if you specify a correct relative path:

jayhesselberth commented 3 years ago

Seems like a an easy fix, just provide a full path?

lkwhite commented 3 years ago

Yeah, I didn't put this here because I need you to fix it, just to remind myself I'll need to fix it eventually.

On Wed, Oct 27, 2021 at 12:58 PM Jay Hesselberth @.***> wrote:

Seems like a an easy fix, just provide a full path?

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