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rnabioco / raer

Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments

https://rnabioco.github.io/raer/

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Closed sheridar closed 2 years ago

sheridar commented 2 years ago

Count reads aligning to plus and minus strands separately
Bug causes read2 to never get flipped, issue with how BAM_FPAIRED is evaluated
Counts still do not match what is in bam file, some examples: SPCS3:1, SSR3:1, SPCS3:137

kriemo commented 2 years ago

LGTM, thanks.