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rnabioco / raer

Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments
https://rnabioco.github.io/raer/
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updated single cell processing #62

Closed kriemo closed 1 year ago

kriemo commented 1 year ago

This should be much more memory efficient and doesn't require pre-sorting and indexing by cellbarcodes. Needs some more testing before merging.

kriemo commented 1 year ago

For now I'm keeping the older sc_editing() approach and related code to perform some benchmarking. Future PRs will deprecate/remove the older approach and refactor the main c pileup function to reduce code duplication.