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rnabioco / raer

Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments
https://rnabioco.github.io/raer/
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add sample rse data #71

Closed jayhesselberth closed 1 year ago

jayhesselberth commented 1 year ago

@kriemo it might be useful to increase the size of these data, maybe to a few hundred sites, just to capture the variability in real data.

How did you generate the original BAM files? You can add the code that generates BAMs to data-raw and we can adjust from there.

jayhesselberth commented 1 year ago

It also looks like this experiment has replicates, so it would be useful to include those to be able to test the differential site usage side of things. maybe just all sites on the smallest chromosome for all replicates, at some depth threshold that eliminates most of the low coverage stuff?