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rnabioco / raer

Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments
https://rnabioco.github.io/raer/
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filter functions now provide feedback #74

Closed jayhesselberth closed 1 year ago

jayhesselberth commented 1 year ago

use rse_adar_ifn for examples

closes #67

jayhesselberth commented 1 year ago

example output:

>   filter_splice_variants(
+     rse_adar_ifn,
+     TxDb.Hsapiens.UCSC.hg38.knownGene
+   )
ℹ `filter_splice_variants()`: removed 0 sites from 74 (74 remain)
>   rse <- filter_multiallelic(rse_adar_ifn)
ℹ `filter_multiallelic()`: removed 2 sites from 74 (72 remain)
> 
>   filter_clustered_variants(
+     rse,
+     TxDb.Hsapiens.UCSC.hg38.knownGene
+   )
ℹ `filter_clustered_variants()`: removed 70 sites from 72 (2 remain)