f-kretschmer
commented
1 year ago Hello,
The percentage is a certainty estimate, taken from the softmax output layer(s). For multiple chunks, by default this estimate (and depending on this the predicted "best" class) is averaged. If you would like predictions and certainty estimates for each chunk individually, look at the option --chunk_predictions.
Best, Fleming
SorenHeidelbach
Hello, very nice tool! It ran smooothly.
I only have a clarification question about the output (during default running parameters). I get the headers [id, superkingdom, (%), ...] in bertax.tsv file, does the percentage refer to the percentage of chunks classified as the respective superkingdom or is it a certainty estimate? I used it to classify contigs, of which most were above 1500 nt, so most would be multiple chunks.
Best