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rnajena
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viralclust
Small pipeline to cluster viral genomes based on their k-mer content. WiP
GNU General Public License v3.0
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RAM vs Diskspace trade off
#21
klamkiew
closed
1 year ago
0
HDBSCAN error for large dataset
#20
sandraTriebel
opened
1 year ago
1
invalid compressed data in ncbi update process
#19
klamkiew
opened
1 year ago
0
better restrictions for yml files
#18
klamkiew
closed
1 year ago
0
use PCA instead of UMAP as default dimension reduction for HDBscan
#17
klamkiew
closed
2 years ago
0
nextflow exits if HDBSCAN has no unclustered sequences
#16
klamkiew
closed
2 years ago
0
sort_sequences: different default behavior
#15
klamkiew
closed
2 years ago
0
grep command in sumaclust.nf to filter singleton cluster
#14
klamkiew
closed
2 years ago
0
Inconsistent use of the label revComp/revcomp
#13
matthuska
closed
2 years ago
2
evaluation script is executed 5 times for each cluster tool
#12
klamkiew
closed
3 years ago
0
Preprocessing filter for large stretches of consecutive Ns
#11
klamkiew
opened
3 years ago
0
unclustered sequences in final set in mmseqs2
#10
klamkiew
closed
2 years ago
0
UpSetR plots for representative genomes and GOI
#9
klamkiew
opened
3 years ago
0
NCBI collection year format
#8
klamkiew
opened
3 years ago
0
NCBI annotation via Regex
#7
klamkiew
closed
3 years ago
1
parameter/profiles for global and local cluster structures
#6
klamkiew
opened
3 years ago
0
multiprocessing for sort-sequences
#5
klamkiew
opened
3 years ago
0
NCBI Accession IDs enhancement
#4
klamkiew
closed
2 years ago
1
divide input sequences for positive / negative strand
#3
klamkiew
closed
3 years ago
0
duplicated sequence in final set
#2
klamkiew
closed
3 years ago
0
empty sequences after umap&hdbscan for k=5
#1
klamkiew
closed
3 years ago
1