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rnakato / ShortCake

A docker image for single-cell analysis
https://hub.docker.com/r/rnakato/shortcake
GNU General Public License v3.0
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nbconvert failed: module 'jinja2' has no attribute 'Markup' #6

Closed JiantaoShi closed 1 year ago

JiantaoShi commented 1 year ago

This is a great docker image. But in the latest version (v1.1.0), Jupiter failed to convert notebook to html files. We thus get the following error: nbconvert failed: module 'jinja2' has no attribute 'Markup'

JiantaoShi commented 1 year ago
shortcase_Jupyter_error
JiantaoShi commented 1 year ago
shortcase_Jupyter_error2
rnakato commented 1 year ago

Hi JiantaoShi, I updated ShortCake v1.1.1 in which jinja2 is downgraded to v3.0.3. Could you try it?

reference: https://github.com/microsoft/vscode-jupyter/issues/9468

JiantaoShi commented 1 year ago

Thanks, the issues have been solved!

Jiantao