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robertaboukhalil / ginkgo

Cloud-based single-cell copy-number variation analysis tool
qb.cshl.edu/ginkgo
BSD 2-Clause "Simplified" License
47 stars 28 forks source link

Ginkgo Web Platform: Extracting Read count data #15

Closed jirianto closed 5 years ago

jirianto commented 5 years ago

Hi,

I'm just wondering, would it be possible to extract the Read count data of each bin from the Ginkgo Web Platform? Instead of the normalized count.

Thank you, Jerome Irianto

mschatz commented 5 years ago

We generally discourage looking at the raw counts, but they are available with a little editing of the URL.

If your samples are loaded at: http://qb.cshl.edu/ginkgo/?q=results/

Then edit it to be http://qb.cshl.edu/ginkgo/uploads//data

For example: http://qb.cshl.edu/ginkgo/?q=results/JGrZXzTDYnabQuQM9MbU http://qb.cshl.edu/ginkgo/uploads/JGrZXzTDYnabQuQM9MbU/data

Good luck!

Mike

On Thu, Dec 6, 2018 at 11:10 AM jirianto notifications@github.com wrote:

Hi,

I'm just wondering, would it be possible to extract the Read count data of each bin from the Ginkgo Web Platform? Instead of the normalized count.

Thank you, Jerome Irianto

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/robertaboukhalil/ginkgo/issues/15, or mute the thread https://github.com/notifications/unsubscribe-auth/AAL980n0ROyAFvghEdszP2R-3r6DWowvks5u2UF8gaJpZM4ZG0UQ .

jirianto commented 5 years ago

Worked like a charm, thank you Mike!!

Jerome