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robertaboukhalil / ginkgo

Cloud-based single-cell copy-number variation analysis tool
qb.cshl.edu/ginkgo
BSD 2-Clause "Simplified" License
47 stars 28 forks source link

Web-platform: Error Gateway Time-out #28

Closed silvainp closed 4 years ago

silvainp commented 4 years ago

Hello all, I try to upload some bed.gz files (25-150Mb) to use the web-platform of Ginkgo but I still have this Error Gateway Time-out. Could you please let me know how to fix it? Many thanks for your help.

robertaboukhalil commented 4 years ago

Yes, we sometimes see intermittent problems with our current hosting. Could you give it another try?

silvainp commented 4 years ago

Thanks it is working now. many thanks for the tool! I would like to download a better version of the GC bias plot. Is there a way to download the data for this plot?

robertaboukhalil commented 4 years ago

We don't have a way to download that data from the GUI directly, but here is the code you can run for generating GC plots: https://github.com/robertaboukhalil/ginkgo/blob/master/scripts/analyze-subset.R#L127