robertaboukhalil / ginkgo

Cloud-based single-cell copy-number variation analysis tool
qb.cshl.edu/ginkgo
BSD 2-Clause "Simplified" License
47 stars 28 forks source link

Web platform - processing issues #41

Open leachim opened 2 years ago

leachim commented 2 years ago

Hi,

I am trying to run Ginkgo on some data published by the Navin lab for the purpose of comparing performance. The data are described in https://www.nature.com/articles/s41586-021-03357-x

I am having some issues first with uploading the data, but even after that succeeds, the process appears to stop at 0% in the Calling copy number events (Initializing variables).... step. Do you have any advice or solution? It might be worth adding the data from above to the set of pre-processed data, and I'd be happy to contribute to that effort.