robertaboukhalil / ginkgo

Cloud-based single-cell copy-number variation analysis tool
qb.cshl.edu/ginkgo
BSD 2-Clause "Simplified" License
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Cannot select any cells in Step1 #46

Open RonjaJohnen opened 11 months ago

RonjaJohnen commented 11 months ago

After uploading the .bed files, I cannot select any cells in Step1, therefore when trying to start the analysis the error message 'Please choose at least 3 cells for your analysis.' pops up. Is it something that can be fixed? Thank you so much for your help! Best Ronja

ShaynaMallett commented 9 months ago

Hi I am having the same issue but I used Ginkgo just fine a week ago. I tried clearing cache/cookies and using an incognito window. The upload page shows the files successfully uploaded but none are visible on the next page and selecting "all cells" doesn't work. I can send the link to my run if needed for debugging. Thank you for your help!

mschatz commented 9 months ago

Yes, can you send me to the link?

Thanks! Mike

On Mon, Jan 29, 2024 at 4:38 PM Shayna Mallett @.***> wrote:

Hi I am having the same issue but I used Ginkgo just fine a week ago. I tried clearing cache/cookies and using an incognito window. The upload page shows the files successfully uploaded but none are visible on the next page and selecting "all cells" doesn't work. I can send the link to my run if needed for debugging. Thank you for your help!

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ShaynaMallett commented 9 months ago

Apologies for the delay, Here is the link to the run that won't let me select any cells. We've tried to set up the command line version of ginkgo but not had much success yet.

http://qb.cshl.edu/ginkgo?q=results/Kh0NQrUSrHoRrm5crIWp

On Tue, Jan 30, 2024 at 11:38 PM Michael Schatz @.***> wrote:

Yes, can you send me to the link?

Thanks! Mike

On Mon, Jan 29, 2024 at 4:38 PM Shayna Mallett @.***> wrote:

Hi I am having the same issue but I used Ginkgo just fine a week ago. I tried clearing cache/cookies and using an incognito window. The upload page shows the files successfully uploaded but none are visible on the next page and selecting "all cells" doesn't work. I can send the link to my run if needed for debugging. Thank you for your help!

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