Keep an alias/location file for common annotation program profiles

robinandeer / puzzle

Variant caller GUI + genetic disease analysis

https://robinandeer.gitbooks.io/puzzle/content/

MIT License

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Keep an alias/location file for common annotation program profiles #162

Open dnil opened 8 years ago

dnil commented 8 years ago

A table/structure with locations for common annotations should be kept to make it easy to keep compatibility with common annotation programs w/o having to mod the code.

E.g.

frequency.EXaC { VCF/INFO/EXAC VCF/INFO/MAF_EXAC VCF/INFO/CSQ/EXaC_MAF VCF/INFO/ANN/MAF_EXAC GEMINI/aaf_exac_all } frequency.1000GAF, { GEMINI/aaf_1kg_all VCF/INFO/1000GAF VCF/INFO/CSQ/GMAF }

moonso commented 8 years ago

Good idea!